SNP Report
Basic Infomation
| Name | rs2297905 dbSNP |
|---|---|
| Location | chr:1,201016646 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11804082 | 0.92[EUR][1000 genomes] |
| rs11805861 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[EUR][1000 genomes] |
| rs12029212 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs12032370 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12121970 | 1.00[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs12139527 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12140231 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes] |
| rs12145340 | 1.00[CEU][hapmap];0.86[TSI][hapmap] |
| rs16847508 | 1.00[CEU][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs2279944 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3818873 | 0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs41269929 | 0.90[EUR][1000 genomes] |
| rs55861132 | 0.96[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs56770229 | 0.90[EUR][1000 genomes] |
| rs57477179 | 0.90[EUR][1000 genomes] |
| rs57778851 | 0.90[EUR][1000 genomes] |
| rs60112590 | 0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6663263 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs6667956 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs6692235 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs6692427 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs74138815 | 0.93[EUR][1000 genomes] |
| rs756254 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CACNA1S | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014