SNP Report
Basic Infomation
| Name | rs57477179 dbSNP |
|---|---|
| Location | chr:1,200999656 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11804082 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11805861 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12032370 | 0.82[EUR][1000 genomes] |
| rs12121970 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs12127882 | 0.83[EUR][1000 genomes] |
| rs12139527 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12140231 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16847508 | 0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2279944 | 0.94[EUR][1000 genomes] |
| rs2297905 | 0.90[EUR][1000 genomes] |
| rs41269929 | 0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs55861132 | 0.86[EUR][1000 genomes] |
| rs56770229 | 0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs57778851 | 0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs60112590 | 0.90[EUR][1000 genomes] |
| rs6663263 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6667956 | 0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6692235 | 0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6692427 | 0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs74138815 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs756254 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000234132 | Proximal transcriptional regulation |
| KIF21B | Distal transcriptional regulation |
| ENSG00000229191 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014