SNP Report

Basic Infomation

Name	rs11819184 dbSNP
Location	chr:10,93746420
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 43)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1107947	0.82[ASN][1000 genomes]
rs11812701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817194	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817266	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818808	0.89[ASN][1000 genomes]
rs17349172	0.82[ASN][1000 genomes]
rs17364211	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs2138701	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421796	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2676804	0.82[EUR][1000 genomes]
rs35535933	1.00[ASN][1000 genomes]
rs45611639	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4565820	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs55732480	0.89[ASN][1000 genomes]
rs61874749	0.90[ASN][1000 genomes]
rs61874751	0.82[ASN][1000 genomes]
rs7071217	0.92[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7072906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093658	1.00[CHB][hapmap]
rs7094274	0.85[CEU][hapmap];1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7095552	0.82[ASN][1000 genomes]
rs72807234	0.89[ASN][1000 genomes]
rs72807240	0.89[ASN][1000 genomes]
rs72807242	0.89[ASN][1000 genomes]
rs72807247	0.89[ASN][1000 genomes]
rs72807254	0.89[ASN][1000 genomes]
rs72807268	0.89[ASN][1000 genomes]
rs72807269	0.89[ASN][1000 genomes]
rs72807274	0.89[ASN][1000 genomes]
rs72823181	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823185	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823189	0.90[ASN][1000 genomes]
rs72823191	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823200	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72823201	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825306	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72825315	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7897761	0.82[ASN][1000 genomes]
rs7899706	0.89[ASN][1000 genomes]
rs833363	0.89[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
BTAF1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 4)

eQTL related gene	Source
LIPN	SCAN
CPEB3	SCAN
NOC3L	SCAN
TNS1	SCAN