SNP Report
Basic Infomation
| Name | rs72823185 dbSNP |
|---|---|
| Location | chr:10,93695310 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1107947 | 0.82[ASN][1000 genomes] |
| rs11812701 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11816821 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11817194 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11817266 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11818046 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11819184 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17349172 | 0.82[ASN][1000 genomes] |
| rs17364211 | 0.89[ASN][1000 genomes] |
| rs2138701 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2421796 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35535933 | 1.00[ASN][1000 genomes] |
| rs45611639 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4565820 | 0.89[ASN][1000 genomes] |
| rs61874749 | 0.90[ASN][1000 genomes] |
| rs61874751 | 0.82[ASN][1000 genomes] |
| rs7071217 | 0.89[ASN][1000 genomes] |
| rs7072906 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7094274 | 0.89[ASN][1000 genomes] |
| rs7095552 | 0.82[ASN][1000 genomes] |
| rs72807234 | 0.89[ASN][1000 genomes] |
| rs72807240 | 0.89[ASN][1000 genomes] |
| rs72807242 | 0.89[ASN][1000 genomes] |
| rs72807247 | 0.89[ASN][1000 genomes] |
| rs72807254 | 0.89[ASN][1000 genomes] |
| rs72823181 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72823189 | 0.90[ASN][1000 genomes] |
| rs72823191 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72823200 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72823201 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72825305 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72825306 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72825315 | 0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7897761 | 0.82[ASN][1000 genomes] |
| rs7899706 | 0.89[ASN][1000 genomes] |
| rs833363 | 0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BTAF1 | Distal transcriptional regulation |
| FGFBP3 | Distal transcriptional regulation |
| BTAF1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014