SNP Report
Basic Infomation
| Name | rs11168858 dbSNP |
|---|---|
| Location | chr:12,49496242 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11168855 | 1.00[AMR][1000 genomes] |
| rs11168871 | 1.00[MEX][hapmap];1.00[AMR][1000 genomes] |
| rs11168898 | 1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.94[YRI][hapmap] |
| rs11168923 | 1.00[MEX][hapmap] |
| rs12298540 | 1.00[AMR][1000 genomes] |
| rs12301841 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12308383 | 1.00[AMR][1000 genomes] |
| rs12309311 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12311604 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12314634 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12314888 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12315823 | 1.00[MEX][hapmap] |
| rs12318907 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12320695 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17123645 | 1.00[MEX][hapmap] |
| rs3782356 | 1.00[CHD][hapmap] |
| rs59178045 | 1.00[AMR][1000 genomes] |
| rs61539002 | 0.87[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs61557154 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73304131 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LMBR1L | Proximal transcriptional regulation |
| PRKAG1 | Distal transcriptional regulation |
| ENSG00000258017 | Distal transcriptional regulation |
| TUBA1B | Distal transcriptional regulation |
| ENSG00000200309 | Distal transcriptional regulation |
| ENSG00000257346 | Distal transcriptional regulation |
| LMBR1L | Distal transcriptional regulation |
| MLL2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| ECH1 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014