SNP Report
Basic Infomation
| Name | rs12315823 dbSNP |
|---|---|
| Location | chr:12,49598803 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10219709 | 0.93[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs11168858 | 1.00[MEX][hapmap] |
| rs11168871 | 1.00[MEX][hapmap] |
| rs11168898 | 1.00[MEX][hapmap];1.00[AMR][1000 genomes] |
| rs11168899 | 1.00[AMR][1000 genomes] |
| rs11168905 | 1.00[AMR][1000 genomes] |
| rs11168913 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11168916 | 1.00[AMR][1000 genomes] |
| rs11168918 | 1.00[AMR][1000 genomes] |
| rs11168923 | 1.00[MEX][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12296189 | 1.00[AMR][1000 genomes] |
| rs12296265 | 1.00[AMR][1000 genomes] |
| rs12297125 | 0.83[AMR][1000 genomes] |
| rs12298869 | 1.00[AMR][1000 genomes] |
| rs12307514 | 0.83[AMR][1000 genomes] |
| rs12318970 | 1.00[AMR][1000 genomes] |
| rs12321120 | 1.00[AMR][1000 genomes] |
| rs12322965 | 1.00[AMR][1000 genomes] |
| rs17123645 | 1.00[MEX][hapmap] |
| rs61648563 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TUBA1C | Proximal transcriptional regulation |
| TUBA1C | Distal transcriptional regulation |
| TUBA1A | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| ZFP106 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014