SNP Report
Basic Infomation
| Name | rs12307514 dbSNP |
|---|---|
| Location | chr:12,49607179 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10219709 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs11168898 | 0.83[AMR][1000 genomes] |
| rs11168899 | 0.83[AMR][1000 genomes] |
| rs11168905 | 0.83[AMR][1000 genomes] |
| rs11168913 | 0.83[AMR][1000 genomes] |
| rs11168916 | 0.83[AMR][1000 genomes] |
| rs11168918 | 0.83[AMR][1000 genomes] |
| rs11168923 | 0.94[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs12296189 | 0.83[AMR][1000 genomes] |
| rs12296265 | 0.83[AMR][1000 genomes] |
| rs12298869 | 0.83[AMR][1000 genomes] |
| rs12315823 | 0.83[AMR][1000 genomes] |
| rs12318970 | 0.83[AMR][1000 genomes] |
| rs12321120 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs12322965 | 0.94[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs61648563 | 0.83[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000258017 | Distal transcriptional regulation |
| TUBA1B | Distal transcriptional regulation |
| ENSG00000258101 | Distal transcriptional regulation |
| TUBA1C | Distal transcriptional regulation |
| TUBA1A | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014