SNP Report
Basic Infomation
| Name | rs12318907 dbSNP |
|---|---|
| Location | chr:12,49524988 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11168855 | 1.00[AMR][1000 genomes] |
| rs11168858 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11168871 | 1.00[AMR][1000 genomes] |
| rs12298540 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12301841 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12308383 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12309311 | 1.00[AMR][1000 genomes] |
| rs12311604 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12314634 | 1.00[AMR][1000 genomes] |
| rs12314888 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12320695 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59178045 | 1.00[AMR][1000 genomes] |
| rs61539002 | 0.89[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs61557154 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73304131 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TUBA1B | Proximal transcriptional regulation |
| ENSG00000258017 | Proximal transcriptional regulation |
| BUB1B | Distal transcriptional regulation |
| CENPBD1 | Distal transcriptional regulation |
| AFG3L1P | Distal transcriptional regulation |
| WRAP53 | Distal transcriptional regulation |
| KCNG3 | Distal transcriptional regulation |
| WFDC3 | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
| C1orf63 | Distal transcriptional regulation |
| ENSG00000270103 | Distal transcriptional regulation |
| TSSK3 | Distal transcriptional regulation |
| WARS2 | Distal transcriptional regulation |
| ENSG00000231365 | Distal transcriptional regulation |
| HIST2H2AC | Distal transcriptional regulation |
| POGZ | Distal transcriptional regulation |
| SHC1 | Distal transcriptional regulation |
| TRMT1L | Distal transcriptional regulation |
| SWT1 | Distal transcriptional regulation |
| RPL27A | Distal transcriptional regulation |
| WDR74 | Distal transcriptional regulation |
| ENSG00000214391 | Distal transcriptional regulation |
| TAF1D | Distal transcriptional regulation |
| C11orf54 | Distal transcriptional regulation |
| ANKRD49 | Distal transcriptional regulation |
| MRE11A | Distal transcriptional regulation |
| DOCK9 | Distal transcriptional regulation |
| SDR39U1 | Distal transcriptional regulation |
| MAP4K5 | Distal transcriptional regulation |
| RNU5A-1 | Distal transcriptional regulation |
| B2M | Distal transcriptional regulation |
| MYLPF | Distal transcriptional regulation |
| ZNF48 | Distal transcriptional regulation |
| MSLN | Distal transcriptional regulation |
| PAPD5 | Distal transcriptional regulation |
| ENSG00000262049 | Distal transcriptional regulation |
| CCDC9 | Distal transcriptional regulation |
| CIC | Distal transcriptional regulation |
| IMMT | Distal transcriptional regulation |
| NDUFB5 | Distal transcriptional regulation |
| GPX1 | Distal transcriptional regulation |
| TRNT1 | Distal transcriptional regulation |
| NKIRAS1 | Distal transcriptional regulation |
| RPL15 | Distal transcriptional regulation |
| C3orf58 | Distal transcriptional regulation |
| ACTL6A | Distal transcriptional regulation |
| RHOBTB3 | Distal transcriptional regulation |
| ERAP1 | Distal transcriptional regulation |
| FBXL17 | Distal transcriptional regulation |
| GDF9 | Distal transcriptional regulation |
| UQCRQ | Distal transcriptional regulation |
| TBCA | Distal transcriptional regulation |
| PANK3 | Distal transcriptional regulation |
| NUDCD2 | Distal transcriptional regulation |
| HMMR | Distal transcriptional regulation |
| RICTOR | Distal transcriptional regulation |
| HIST1H4C | Distal transcriptional regulation |
| PPP1R11 | Distal transcriptional regulation |
| MEPCE | Distal transcriptional regulation |
| RPL12 | Distal transcriptional regulation |
| LRSAM1 | Distal transcriptional regulation |
| CEP78 | Distal transcriptional regulation |
| VCP | Distal transcriptional regulation |
| TEAD4 | Distal transcriptional regulation |
| YARS2 | Distal transcriptional regulation |
| ENSG00000212694 | Distal transcriptional regulation |
| ENSG00000256392 | Distal transcriptional regulation |
| TUBA1C | Distal transcriptional regulation |
| STAT6 | Distal transcriptional regulation |
| RNU4-2 | Distal transcriptional regulation |
| HIST1H3J | Distal transcriptional regulation |
| HIST1H2AM | Distal transcriptional regulation |
| HIST1H2BO | Distal transcriptional regulation |
| TRMT2A | Distal transcriptional regulation |
| HIST1H4B | Distal transcriptional regulation |
| ENSG00000257913 | Distal transcriptional regulation |
| DDN | Distal transcriptional regulation |
| PRKAG1 | Distal transcriptional regulation |
| MLL2 | Distal transcriptional regulation |
| RHEBL1 | Distal transcriptional regulation |
| ENSG00000257346 | Distal transcriptional regulation |
| DHH | Distal transcriptional regulation |
| ENSG00000258101 | Distal transcriptional regulation |
| TUBA1A | Distal transcriptional regulation |
| TMBIM6 | Distal transcriptional regulation |
| MCRS1 | Distal transcriptional regulation |
| PRPF40B | Distal transcriptional regulation |
| ENSG00000200997 | Distal transcriptional regulation |
| UBE3D | Distal transcriptional regulation |
| DOPEY1 | Distal transcriptional regulation |
| CACNB3 | Distal transcriptional regulation |
| ARF3 | Distal transcriptional regulation |
| ENSG00000258283 | Distal transcriptional regulation |
| LMBR1L | Distal transcriptional regulation |
| C1QL4 | Distal transcriptional regulation |
| SMARCD1 | Distal transcriptional regulation |
| RNU1-5 | Distal transcriptional regulation |
| UBXN4 | Distal transcriptional regulation |
| PRPH | Distal transcriptional regulation |
| ENSG00000188825 | Distal transcriptional regulation |
| ZFP36L2 | Distal transcriptional regulation |
| LNP1 | Distal transcriptional regulation |
| TOMM70A | Distal transcriptional regulation |
| ENSG00000258017 | RNA binding protein mediated regulation |
| TUBA1B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014