SNP Report
Basic Infomation
| Name | rs12301841 dbSNP |
|---|---|
| Location | chr:12,49523566 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11168855 | 1.00[AMR][1000 genomes] |
| rs11168858 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11168871 | 1.00[AMR][1000 genomes] |
| rs12298540 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12308383 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12309311 | 1.00[AMR][1000 genomes] |
| rs12311604 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12314634 | 1.00[AMR][1000 genomes] |
| rs12314888 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12318907 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12320695 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59178045 | 1.00[AMR][1000 genomes] |
| rs61539002 | 0.91[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs61557154 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73304131 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000258017 | Proximal transcriptional regulation |
| RPF2 | Distal transcriptional regulation |
| HIST1H3J | Distal transcriptional regulation |
| HIST1H2AM | Distal transcriptional regulation |
| HIST1H2BO | Distal transcriptional regulation |
| TRMT2A | Distal transcriptional regulation |
| PRKAG1 | Distal transcriptional regulation |
| MLL2 | Distal transcriptional regulation |
| RHEBL1 | Distal transcriptional regulation |
| ENSG00000257346 | Distal transcriptional regulation |
| DHH | Distal transcriptional regulation |
| TUBA1C | Distal transcriptional regulation |
| ENSG00000258101 | Distal transcriptional regulation |
| TUBA1A | Distal transcriptional regulation |
| ENSG00000200997 | Distal transcriptional regulation |
| LMBR1L | Distal transcriptional regulation |
| ENSG00000258017 | RNA binding protein mediated regulation |
| TUBA1B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014