SNP Report
Basic Infomation
| Name | rs930230 dbSNP |
|---|---|
| Location | chr:19,10542013 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10424109 | 0.97[EUR][1000 genomes] |
| rs11878850 | 1.00[CEU][hapmap];0.99[EUR][1000 genomes] |
| rs11882255 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12720279 | 1.00[CHB][hapmap] |
| rs12720339 | 0.83[ASN][1000 genomes] |
| rs12720341 | 0.83[ASN][1000 genomes] |
| rs12720345 | 0.83[ASN][1000 genomes] |
| rs2004370 | 0.83[ASN][1000 genomes] |
| rs2231485 | 0.83[ASN][1000 genomes] |
| rs280500 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs280501 | 1.00[CHB][hapmap] |
| rs280502 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs280508 | 0.83[ASN][1000 genomes] |
| rs280509 | 0.83[ASN][1000 genomes] |
| rs280521 | 1.00[CHB][hapmap] |
| rs4804505 | 1.00[CHB][hapmap] |
| rs58344707 | 0.97[EUR][1000 genomes] |
| rs6511697 | 0.83[ASN][1000 genomes] |
| rs7249333 | 0.83[ASN][1000 genomes] |
| rs7252897 | 0.97[EUR][1000 genomes] |
| rs73923221 | 0.80[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs8110715 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs923367 | 0.97[EUR][1000 genomes] |
| rs930229 | 0.97[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PDE4A | Proximal transcriptional regulation |
| ENSG00000267607 | Distal transcriptional regulation |
| ICAM5 | Distal transcriptional regulation |
| KEAP1 | Distal transcriptional regulation |
| KRI1 | Distal transcriptional regulation |
| ANGPTL6 | Distal transcriptional regulation |
| CDC37 | Distal transcriptional regulation |
| MIR1181 | Distal transcriptional regulation |
| PDE4A | Distal transcriptional regulation |
| ENSG00000238364 | Distal transcriptional regulation |
| ATG4D | Distal transcriptional regulation |
| MIR1238 | Distal transcriptional regulation |
| PDE4A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014