SNP Report
Basic Infomation
| Name | rs280500 dbSNP |
|---|---|
| Location | chr:19,10490402 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11882255 | 0.94[ASN][1000 genomes] |
| rs12720279 | 1.00[CHB][hapmap] |
| rs12720307 | 1.00[CHB][hapmap] |
| rs12720339 | 0.88[ASN][1000 genomes] |
| rs12720341 | 0.88[ASN][1000 genomes] |
| rs12720345 | 0.88[ASN][1000 genomes] |
| rs2004370 | 0.88[ASN][1000 genomes] |
| rs2231485 | 0.88[ASN][1000 genomes] |
| rs2304259 | 1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs280501 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs280502 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs280505 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs280506 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs280508 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs280509 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs280521 | 1.00[CHB][hapmap];1.00[CHD][hapmap] |
| rs4804505 | 1.00[CHB][hapmap] |
| rs6511697 | 1.00[ASN][1000 genomes] |
| rs7249333 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs930230 | 1.00[CHB][hapmap];0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TYK2 | Proximal transcriptional regulation |
| DNMT1 | Distal transcriptional regulation |
| MRPL4 | Distal transcriptional regulation |
| ICAM1 | Distal transcriptional regulation |
| ICAM4 | Distal transcriptional regulation |
| ENSG00000267607 | Distal transcriptional regulation |
| ICAM5 | Distal transcriptional regulation |
| RAVER1 | Distal transcriptional regulation |
| ICAM3 | Distal transcriptional regulation |
| TYK2 | Distal transcriptional regulation |
| ENSG00000267105 | Distal transcriptional regulation |
| ENSG00000266978 | Distal transcriptional regulation |
| PDE4A | Distal transcriptional regulation |
| CDC37 | Distal transcriptional regulation |
| TYK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014