SNP Report

Basic Infomation

Name	rs280502 dbSNP
Location	chr:19,10491475
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 20)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11882255	0.94[ASN][1000 genomes]
rs12720279	1.00[CHB][hapmap]
rs12720307	1.00[CHB][hapmap]
rs12720339	0.88[ASN][1000 genomes]
rs12720341	0.88[ASN][1000 genomes]
rs12720345	0.88[ASN][1000 genomes]
rs2004370	0.88[ASN][1000 genomes]
rs2231485	0.88[ASN][1000 genomes]
rs2304259	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs280500	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280501	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs280505	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs280506	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs280508	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280509	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs280521	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs4804505	1.00[CHB][hapmap]
rs6511697	1.00[ASN][1000 genomes]
rs7249333	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs930230	1.00[CHB][hapmap];0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
TYK2	Proximal transcriptional regulation
PRDX1	Distal transcriptional regulation
ENSG00000229848	Distal transcriptional regulation
ARHGEF4	Distal transcriptional regulation
ENSG00000233221	Distal transcriptional regulation
DNMT1	Distal transcriptional regulation
MRPL4	Distal transcriptional regulation
ICAM1	Distal transcriptional regulation
ENSG00000266978	Distal transcriptional regulation
ICAM4	Distal transcriptional regulation
ENSG00000267607	Distal transcriptional regulation
ICAM5	Distal transcriptional regulation
RAVER1	Distal transcriptional regulation
ICAM3	Distal transcriptional regulation
TYK2	Distal transcriptional regulation
ENSG00000267105	Distal transcriptional regulation
PDE4A	Distal transcriptional regulation
CDC37	Distal transcriptional regulation
WDR74	Distal transcriptional regulation
PATL2	Distal transcriptional regulation
B2M	Distal transcriptional regulation
C16orf88	Distal transcriptional regulation
IQCK	Distal transcriptional regulation
ALDOA	Distal transcriptional regulation
CEP135	Distal transcriptional regulation
TMEM68	Distal transcriptional regulation
TGS1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)