SNP Report
Basic Infomation
| Name | rs927220 dbSNP |
|---|---|
| Location | chr:14,68767972 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 44)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10083393 | 0.91[AFR][1000 genomes];0.99[EUR][1000 genomes] |
| rs10131654 | 0.95[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10135678 | 0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10136039 | 0.82[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10144669 | 0.90[CEU][hapmap];0.96[YRI][hapmap];0.96[EUR][1000 genomes] |
| rs10483807 | 0.90[GIH][hapmap] |
| rs11158728 | 1.00[GIH][hapmap] |
| rs11158730 | 0.90[GIH][hapmap] |
| rs11621881 | 0.94[EUR][1000 genomes] |
| rs11627646 | 1.00[GIH][hapmap] |
| rs12880109 | 0.88[GIH][hapmap] |
| rs12890124 | 1.00[GIH][hapmap] |
| rs12892777 | 0.90[GIH][hapmap] |
| rs1956523 | 0.95[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1956526 | 0.85[GIH][hapmap] |
| rs1956528 | 1.00[GIH][hapmap] |
| rs1956529 | 1.00[GIH][hapmap] |
| rs1956532 | 1.00[GIH][hapmap] |
| rs2013413 | 0.90[GIH][hapmap] |
| rs2064912 | 1.00[GIH][hapmap] |
| rs2064914 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2145423 | 1.00[GIH][hapmap] |
| rs3784104 | 1.00[GIH][hapmap] |
| rs3784106 | 0.95[CEU][hapmap];0.88[GIH][hapmap];0.90[TSI][hapmap];0.96[EUR][1000 genomes] |
| rs3784108 | 1.00[GIH][hapmap] |
| rs4410007 | 0.96[EUR][1000 genomes] |
| rs4899238 | 0.91[AFR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4902566 | 0.82[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7147852 | 1.00[GIH][hapmap] |
| rs7148322 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7148412 | 0.95[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7149396 | 0.85[GIH][hapmap];0.87[TSI][hapmap];0.96[YRI][hapmap];0.94[EUR][1000 genomes] |
| rs7150988 | 1.00[GIH][hapmap] |
| rs7151629 | 0.88[ASW][hapmap];0.95[CEU][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.98[LWK][hapmap];0.83[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7493547 | 0.95[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs8013078 | 0.95[CEU][hapmap];0.93[YRI][hapmap];0.97[EUR][1000 genomes] |
| rs8013968 | 0.90[AFR][1000 genomes];0.97[EUR][1000 genomes] |
| rs8017304 | 1.00[GIH][hapmap] |
| rs8022860 | 0.97[EUR][1000 genomes] |
| rs911254 | 0.90[GIH][hapmap] |
| rs911255 | 0.95[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs911258 | 0.95[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9323506 | 0.90[EUR][1000 genomes] |
| rs9989152 | 0.95[CEU][hapmap];0.96[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014