SNP Report
Basic Infomation
| Name | rs4902566 dbSNP |
|---|---|
| Location | chr:14,68793554 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 47)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10083393 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10131654 | 1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10135678 | 0.92[AFR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10136039 | 0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10144669 | 0.95[CEU][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10483807 | 0.90[GIH][hapmap] |
| rs11158728 | 1.00[GIH][hapmap] |
| rs11158730 | 0.90[GIH][hapmap] |
| rs11621881 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11627646 | 1.00[GIH][hapmap] |
| rs12880109 | 0.88[GIH][hapmap] |
| rs12890124 | 1.00[GIH][hapmap] |
| rs12892777 | 0.90[GIH][hapmap] |
| rs1956523 | 1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1956524 | 0.81[CHB][hapmap] |
| rs1956525 | 0.86[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs1956526 | 0.80[CHD][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs1956528 | 1.00[GIH][hapmap] |
| rs1956529 | 1.00[GIH][hapmap] |
| rs1956532 | 1.00[GIH][hapmap] |
| rs2013413 | 0.90[GIH][hapmap] |
| rs2064912 | 1.00[GIH][hapmap] |
| rs2064914 | 0.81[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2145422 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs2145423 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs3784104 | 1.00[GIH][hapmap] |
| rs3784106 | 1.00[CEU][hapmap];0.88[GIH][hapmap];0.90[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs3784108 | 0.81[CHD][hapmap];1.00[GIH][hapmap] |
| rs4410007 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4899238 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7147852 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs7148322 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7148412 | 1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7149396 | 0.94[ASW][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.86[JPT][hapmap];0.82[LWK][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7150988 | 1.00[GIH][hapmap] |
| rs7151629 | 0.83[ASW][hapmap];1.00[CEU][hapmap];0.90[GIH][hapmap];0.93[LWK][hapmap];0.96[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7493547 | 1.00[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs8013078 | 1.00[CEU][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs8013968 | 0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs8017304 | 1.00[GIH][hapmap] |
| rs8022860 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs911254 | 0.90[GIH][hapmap] |
| rs911255 | 1.00[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs911258 | 1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs927220 | 0.82[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[EUR][1000 genomes] |
| rs9323506 | 0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9989152 | 1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014