SNP Report
Basic Infomation
| Name | rs8081956 dbSNP |
|---|---|
| Location | chr:17,5503958 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10459913 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11652873 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs11657455 | 1.00[YRI][hapmap] |
| rs11658667 | 0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2175827 | 1.00[YRI][hapmap] |
| rs34293306 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs35052285 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3744717 | 1.00[YRI][hapmap] |
| rs4145810 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4577136 | 1.00[YRI][hapmap] |
| rs4790268 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4790780 | 0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4790785 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4790793 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4790800 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs67238881 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs8072160 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs871928 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs884367 | 1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs907874 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs907876 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NLRP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014