SNP Report
Basic Infomation
| Name | rs11652873 dbSNP |
|---|---|
| Location | chr:17,5529525 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10459913 | 0.85[EUR][1000 genomes] |
| rs11658667 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs34293306 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs35052285 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4145810 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4790268 | 0.84[EUR][1000 genomes] |
| rs4790780 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs4790785 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[GIH][hapmap];0.87[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4790793 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4790800 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs67238881 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs8072160 | 0.85[EUR][1000 genomes] |
| rs8081956 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs871928 | 0.86[CHB][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs884367 | 0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs907874 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs907876 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NLRP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014