SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 16)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10748571	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10881982	0.84[JPT][hapmap]
rs10881990	0.96[CHD][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs10881991	1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10881992	0.86[ASN][1000 genomes]
rs10881993	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11186734	0.96[CHD][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs11186735	0.83[ASN][1000 genomes]
rs11186736	0.83[ASN][1000 genomes]
rs11186737	0.87[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];0.91[ASN][1000 genomes]
rs1417256	0.92[JPT][hapmap]
rs1538831	0.85[JPT][hapmap]
rs6583794	0.94[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.81[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap]
rs7083959	0.85[JPT][hapmap]
rs7099658	0.88[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7914295	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
FGFBP3	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
LIPN	SCAN
PDLIM1	SCAN