SNP Report
Basic Infomation
| Name | rs7902087 dbSNP |
|---|---|
| Location | chr:10,93369453 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10509630 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs10509633 | 0.88[EUR][1000 genomes] |
| rs10748561 | 0.92[ASN][1000 genomes] |
| rs10748562 | 0.92[ASN][1000 genomes] |
| rs11595816 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1418155 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1418156 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1418157 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs17106843 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs3781228 | 0.88[EUR][1000 genomes] |
| rs4313485 | 0.92[ASN][1000 genomes] |
| rs4331000 | 0.92[ASN][1000 genomes] |
| rs4933211 | 0.92[ASN][1000 genomes] |
| rs57867863 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58198809 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7893432 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7894061 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| HECTD2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014