SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 14)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10509630	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10509633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592407	0.88[CEU][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11595816	0.88[EUR][1000 genomes]
rs1418155	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1418156	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1418157	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17106843	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57867863	0.88[EUR][1000 genomes]
rs58198809	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7072687	0.88[CEU][hapmap];0.92[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7893432	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7894061	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7902087	0.88[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
PPP1R3C	Distal transcriptional regulation
HECTD2	Distal transcriptional regulation
PPP1R3C	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)