SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 12)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10509630	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509633	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11595816	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1418155	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418156	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106843	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3781228	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57867863	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58198809	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7893432	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894061	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902087	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
HECTD2	Distal transcriptional regulation
PPP1R3C	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)