SNP Report
Basic Infomation
| Name | rs17106843 dbSNP |
|---|---|
| Location | chr:10,93367398 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10509630 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10509633 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10509635 | 0.81[CEU][hapmap] |
| rs11592379 | 0.81[CEU][hapmap] |
| rs11592407 | 0.89[CEU][hapmap] |
| rs11594359 | 0.81[CEU][hapmap] |
| rs11595816 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1418155 | 1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1418156 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1418157 | 0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17107004 | 0.81[CEU][hapmap] |
| rs2000139 | 0.81[CEU][hapmap] |
| rs3781228 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs57867863 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs58198809 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7072687 | 0.89[CEU][hapmap] |
| rs7893432 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7894061 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7902087 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| HECTD2 | Distal transcriptional regulation |
| PPP1R3C | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014