SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 14)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1046912	1.00[ASN][1000 genomes]
rs10792456	0.84[EUR][1000 genomes]
rs11556920	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs11604099	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604621	0.81[AMR][1000 genomes]
rs11604798	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11605583	1.00[EUR][1000 genomes]
rs2458297	0.94[EUR][1000 genomes]
rs33981236	1.00[ASN][1000 genomes]
rs35251366	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35982635	0.94[EUR][1000 genomes]
rs3915452	1.00[EUR][1000 genomes]
rs3915453	1.00[EUR][1000 genomes]
rs608404	0.89[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
MRPL49	Proximal transcriptional regulation
FAU	Proximal transcriptional regulation
ZNHIT2	Proximal transcriptional regulation
ARL2	Distal transcriptional regulation
SNX15	Distal transcriptional regulation
POLA2	Distal transcriptional regulation
CAPN1	Distal transcriptional regulation
SPDYC	Distal transcriptional regulation
CDCA5	Distal transcriptional regulation
ZFPL1	Distal transcriptional regulation
VPS51	Distal transcriptional regulation
ENSG00000254614	Distal transcriptional regulation
SF1	Distal transcriptional regulation
ENSG00000269038	Distal transcriptional regulation
EHD1	Distal transcriptional regulation
ENSG00000255200	Distal transcriptional regulation
PGAM1P8	Distal transcriptional regulation
MALAT1	Distal transcriptional regulation
FAU	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 4)