SNP Report
Basic Infomation
| Name | rs11604099 dbSNP |
|---|---|
| Location | chr:11,64873420 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1046912 | 0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10792456 | 0.84[EUR][1000 genomes] |
| rs11556920 | 0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11604621 | 0.97[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs11604798 | 0.87[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11605583 | 1.00[EUR][1000 genomes] |
| rs2458297 | 0.94[EUR][1000 genomes] |
| rs33981236 | 0.85[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35251366 | 0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35982635 | 0.94[EUR][1000 genomes] |
| rs3915452 | 1.00[EUR][1000 genomes] |
| rs3915453 | 1.00[EUR][1000 genomes] |
| rs608404 | 0.89[EUR][1000 genomes] |
| rs769442 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VPS51 | Proximal transcriptional regulation |
| ENSG00000187066 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| SAC3D1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014