SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 7)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11556920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604099	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11604621	1.00[AFR][1000 genomes]
rs11604798	0.86[ASN][1000 genomes]
rs33981236	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35251366	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs769442	1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
TM7SF2	Proximal transcriptional regulation
ENSG00000254501	Proximal transcriptional regulation
ENSG00000255173	Proximal transcriptional regulation
SF1	Distal transcriptional regulation
ENSG00000269038	Distal transcriptional regulation
MAP4K2	Distal transcriptional regulation
CDC42BPG	Distal transcriptional regulation
EHD1	Distal transcriptional regulation
ARL2	Distal transcriptional regulation
SNX15	Distal transcriptional regulation
SPDYC	Distal transcriptional regulation
CAPN1	Distal transcriptional regulation
ENSG00000254614	Distal transcriptional regulation
PPP2R5B	Distal transcriptional regulation
VPS51	Distal transcriptional regulation
CDC42EP2	Distal transcriptional regulation
SLC22A20	Distal transcriptional regulation
ENSG00000222894	Distal transcriptional regulation
RPLP1	Distal transcriptional regulation
WDR74	Distal transcriptional regulation
ENSG00000269290	Distal transcriptional regulation
BATF2	Distal transcriptional regulation
SAC3D1	Distal transcriptional regulation
CDCA5	Distal transcriptional regulation
ZFPL1	Distal transcriptional regulation
ENSG00000255200	Distal transcriptional regulation
PGAM1P8	Distal transcriptional regulation
TM7SF2	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)