SNP Report
Basic Infomation
| Name | rs11556920 dbSNP |
|---|---|
| Location | chr:11,64884663 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1046912 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10895987 | 0.84[CHD][hapmap] |
| rs11604099 | 0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11604621 | 1.00[AFR][1000 genomes] |
| rs11604798 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[ASN][1000 genomes] |
| rs12420097 | 1.00[MKK][hapmap] |
| rs17883283 | 1.00[MEX][hapmap] |
| rs17884773 | 1.00[CEU][hapmap];1.00[MEX][hapmap] |
| rs33981236 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35251366 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs769442 | 1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes] |
| rs9971407 | 0.84[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MRPL49 | Proximal transcriptional regulation |
| NDUFB11 | Distal transcriptional regulation |
| RBM10 | Distal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| MAP4K2 | Distal transcriptional regulation |
| CDC42BPG | Distal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| ARL2 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| SPDYC | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| ENSG00000254614 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| POLA2 | Distal transcriptional regulation |
| ENSG00000222894 | Distal transcriptional regulation |
| RPLP1 | Distal transcriptional regulation |
| TUBB | Distal transcriptional regulation |
| DNAJC14 | Distal transcriptional regulation |
| TMEM198B | Distal transcriptional regulation |
| WDR74 | Distal transcriptional regulation |
| ENSG00000269290 | Distal transcriptional regulation |
| SAC3D1 | Distal transcriptional regulation |
| CDCA5 | Distal transcriptional regulation |
| ZFPL1 | Distal transcriptional regulation |
| ENSG00000255200 | Distal transcriptional regulation |
| PGAM1P8 | Distal transcriptional regulation |
| ZNHIT2 | RNA binding protein mediated regulation |
| ENSG00000255173 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014