SNP Report
Basic Infomation
| Name | rs7410 dbSNP |
|---|---|
| Location | chr:14,68144423 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11626809 | 1.00[ASW][hapmap] |
| rs12147616 | 0.88[MKK][hapmap] |
| rs12878157 | 1.00[ASW][hapmap];1.00[ASN][1000 genomes] |
| rs12880908 | 1.00[ASN][1000 genomes] |
| rs12881114 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12882315 | 0.88[MKK][hapmap] |
| rs12889527 | 0.93[MKK][hapmap] |
| rs12890397 | 0.85[CEU][hapmap] |
| rs17782224 | 1.00[ASN][1000 genomes] |
| rs17782871 | 1.00[ASN][1000 genomes] |
| rs1950764 | 1.00[ASW][hapmap] |
| rs2273160 | 0.88[MKK][hapmap] |
| rs34157082 | 1.00[ASN][1000 genomes] |
| rs34186579 | 1.00[ASN][1000 genomes] |
| rs34666247 | 1.00[ASN][1000 genomes] |
| rs35103502 | 1.00[ASN][1000 genomes] |
| rs3759762 | 0.85[CEU][hapmap] |
| rs3809389 | 1.00[ASW][hapmap] |
| rs56074521 | 1.00[ASN][1000 genomes] |
| rs61682079 | 1.00[ASN][1000 genomes] |
| rs749269 | 1.00[ASW][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RDH11 | Proximal transcriptional regulation |
| VTI1B | Proximal transcriptional regulation |
| VTI1B | Distal transcriptional regulation |
| ENSG00000258466 | Distal transcriptional regulation |
| RDH11 | Distal transcriptional regulation |
| ENSG00000258466 | RNA binding protein mediated regulation |
| RDH11 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014