SNP Report
Basic Infomation
| Name | rs17782224 dbSNP |
|---|---|
| Location | chr:14,68015693 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11158681 | 0.83[CEU][hapmap] |
| rs11158682 | 0.83[CEU][hapmap] |
| rs11158684 | 0.83[CEU][hapmap] |
| rs11621258 | 1.00[YRI][hapmap] |
| rs11625701 | 0.82[AFR][1000 genomes] |
| rs12880908 | 1.00[ASN][1000 genomes] |
| rs12881114 | 1.00[ASN][1000 genomes] |
| rs17191694 | 1.00[YRI][hapmap] |
| rs2145467 | 1.00[YRI][hapmap] |
| rs2319842 | 0.90[EUR][1000 genomes] |
| rs34157082 | 1.00[ASN][1000 genomes] |
| rs34666247 | 1.00[ASN][1000 genomes] |
| rs35103502 | 1.00[ASN][1000 genomes] |
| rs3742879 | 1.00[YRI][hapmap] |
| rs4902479 | 0.83[CEU][hapmap] |
| rs4902483 | 0.83[CEU][hapmap] |
| rs4902487 | 0.90[EUR][1000 genomes] |
| rs56074521 | 1.00[ASN][1000 genomes] |
| rs61682079 | 1.00[ASN][1000 genomes] |
| rs67138363 | 0.89[EUR][1000 genomes] |
| rs7155887 | 0.83[EUR][1000 genomes] |
| rs7410 | 1.00[ASN][1000 genomes] |
| rs753683 | 0.95[CEU][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs9972155 | 0.86[CEU][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PLEKHH1 | Distal transcriptional regulation |
| TMEM229B | Distal transcriptional regulation |
| PLEKHH1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014