SNP Report
Basic Infomation
| Name | rs7155887 dbSNP |
|---|---|
| Location | chr:14,68000209 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11158681 | 0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11158682 | 0.84[EUR][1000 genomes] |
| rs11158683 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11158684 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12434659 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs17782224 | 0.83[EUR][1000 genomes] |
| rs2064929 | 0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2319842 | 0.92[EUR][1000 genomes] |
| rs4902478 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4902479 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4902482 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4902483 | 0.84[EUR][1000 genomes] |
| rs4902484 | 0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4902486 | 0.80[EUR][1000 genomes] |
| rs4902487 | 0.86[EUR][1000 genomes] |
| rs6573780 | 0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs67138363 | 0.91[EUR][1000 genomes] |
| rs7147529 | 0.85[EUR][1000 genomes] |
| rs753683 | 0.92[EUR][1000 genomes] |
| rs9972155 | 0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PCNP | Distal transcriptional regulation |
| PLEKHH1 | Distal transcriptional regulation |
| TMEM229B | Distal transcriptional regulation |
| RDH11 | Distal transcriptional regulation |
| MIR5694 | Distal transcriptional regulation |
| TMEM229B | RNA binding protein mediated regulation |
| PLEKHH1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014