SNP Report
Basic Infomation
| Name | rs4902482 dbSNP |
|---|---|
| Location | chr:14,68001781 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11158681 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11158682 | 0.91[CEU][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11158683 | 0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11158684 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12434659 | 0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs2064929 | 0.83[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4144498 | 0.87[GIH][hapmap];0.84[MEX][hapmap];0.83[YRI][hapmap] |
| rs4902478 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4902479 | 0.84[ASW][hapmap];0.92[CEU][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4902483 | 0.92[CEU][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.97[EUR][1000 genomes] |
| rs4902484 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4902486 | 0.89[EUR][1000 genomes] |
| rs6573780 | 0.83[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7147529 | 0.96[CEU][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7154636 | 0.85[EUR][1000 genomes] |
| rs7155887 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs731681 | 0.83[GIH][hapmap];0.84[MEX][hapmap] |
| rs753683 | 0.80[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TMEM229B | Proximal transcriptional regulation |
| PLEKHH1 | Distal transcriptional regulation |
| MIR5694 | Distal transcriptional regulation |
| PLEKHH1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014