SNP Report
Basic Infomation
| Name | rs4144498 dbSNP |
|---|---|
| Location | chr:14,68005334 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10873205 | 0.82[CEU][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.87[TSI][hapmap];0.83[YRI][hapmap];0.86[EUR][1000 genomes] |
| rs11158681 | 0.83[YRI][hapmap] |
| rs11158684 | 0.82[YRI][hapmap] |
| rs12434659 | 0.81[AFR][1000 genomes] |
| rs12435433 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2064929 | 0.84[MEX][hapmap] |
| rs4902479 | 0.84[MEX][hapmap];0.86[YRI][hapmap] |
| rs4902482 | 0.87[GIH][hapmap];0.84[MEX][hapmap];0.83[YRI][hapmap] |
| rs4902483 | 0.82[YRI][hapmap] |
| rs6573780 | 0.84[MEX][hapmap] |
| rs7141506 | 0.82[CEU][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes] |
| rs7147529 | 0.82[GIH][hapmap];0.84[MEX][hapmap];0.93[YRI][hapmap] |
| rs731681 | 0.96[CEU][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs753682 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9671543 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9671816 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9671980 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TMEM229B | Proximal transcriptional regulation |
| PLEKHH1 | Distal transcriptional regulation |
| TMEM229B | Distal transcriptional regulation |
| PLEKHH1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014