SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 11)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10873205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12435433	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17184938	0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs4144498	0.82[CEU][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes]
rs4902483	0.86[AMR][1000 genomes]
rs731680	0.96[YRI][hapmap];0.91[AFR][1000 genomes]
rs731681	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs753682	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9671543	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9671816	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9671980	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
PLEKHH1	Distal transcriptional regulation
TMEM229B	Distal transcriptional regulation
PLEKHH1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)