SNP Report
Basic Infomation
| Name | rs2064929 dbSNP |
|---|---|
| Location | chr:14,68025260 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11158681 | 0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11158682 | 0.91[CEU][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs11158683 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11158684 | 0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12433356 | 0.87[CHB][hapmap] |
| rs12434659 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12589605 | 0.87[CHB][hapmap] |
| rs17836795 | 0.87[CHB][hapmap] |
| rs4144498 | 0.84[MEX][hapmap] |
| rs4902478 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4902479 | 0.92[CEU][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4902482 | 0.83[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4902483 | 0.92[CEU][hapmap];0.91[JPT][hapmap];0.97[EUR][1000 genomes] |
| rs4902484 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4902486 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6573780 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7147529 | 0.87[CEU][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7154636 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7155887 | 0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs731681 | 0.84[MEX][hapmap] |
| rs753683 | 0.80[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PLEKHH1 | Distal transcriptional regulation |
| TMEM229B | Distal transcriptional regulation |
| PLEKHH1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014