SNP Report
Basic Infomation
| Name | rs11621258 dbSNP |
|---|---|
| Location | chr:14,68169000 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10141638 | 1.00[JPT][hapmap] |
| rs1040598 | 1.00[JPT][hapmap] |
| rs11158694 | 1.00[JPT][hapmap] |
| rs11621019 | 1.00[JPT][hapmap] |
| rs11626332 | 1.00[JPT][hapmap] |
| rs11626769 | 1.00[JPT][hapmap] |
| rs11629282 | 0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12432558 | 1.00[JPT][hapmap] |
| rs12433710 | 1.00[JPT][hapmap] |
| rs12891164 | 1.00[JPT][hapmap] |
| rs12893157 | 1.00[JPT][hapmap] |
| rs1543391 | 1.00[JPT][hapmap] |
| rs17191694 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs17782224 | 1.00[YRI][hapmap] |
| rs17783094 | 1.00[JPT][hapmap] |
| rs1810523 | 1.00[JPT][hapmap] |
| rs181561 | 1.00[JPT][hapmap] |
| rs181564 | 1.00[JPT][hapmap] |
| rs181565 | 1.00[JPT][hapmap] |
| rs181570 | 1.00[JPT][hapmap] |
| rs181576 | 1.00[JPT][hapmap] |
| rs2145467 | 1.00[YRI][hapmap] |
| rs2235967 | 1.00[JPT][hapmap] |
| rs2295106 | 1.00[JPT][hapmap] |
| rs2295107 | 1.00[JPT][hapmap] |
| rs2874132 | 1.00[JPT][hapmap] |
| rs2874133 | 1.00[JPT][hapmap] |
| rs3742879 | 0.92[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs4143685 | 1.00[JPT][hapmap] |
| rs7143196 | 1.00[JPT][hapmap] |
| rs7143496 | 1.00[JPT][hapmap] |
| rs7149482 | 1.00[JPT][hapmap] |
| rs7150705 | 1.00[JPT][hapmap] |
| rs7150903 | 1.00[JPT][hapmap] |
| rs7151495 | 1.00[JPT][hapmap] |
| rs7159622 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000241542 | Proximal transcriptional regulation |
| RDH11 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014