SNP Report
Basic Infomation
| Name | rs74088163 dbSNP |
|---|---|
| Location | chr:12,49111627 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 108)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875834 | 1.00[EUR][1000 genomes] |
| rs11168620 | 1.00[ASN][1000 genomes] |
| rs11168659 | 1.00[ASN][1000 genomes] |
| rs11168660 | 1.00[ASN][1000 genomes] |
| rs11168680 | 1.00[ASN][1000 genomes] |
| rs11168690 | 1.00[ASN][1000 genomes] |
| rs11168691 | 1.00[ASN][1000 genomes] |
| rs11168692 | 1.00[ASN][1000 genomes] |
| rs11168693 | 1.00[ASN][1000 genomes] |
| rs11168694 | 1.00[ASN][1000 genomes] |
| rs11168695 | 1.00[ASN][1000 genomes] |
| rs11168699 | 1.00[ASN][1000 genomes] |
| rs11168700 | 1.00[ASN][1000 genomes] |
| rs11168701 | 1.00[ASN][1000 genomes] |
| rs11168708 | 1.00[ASN][1000 genomes] |
| rs11168722 | 1.00[ASN][1000 genomes] |
| rs11168727 | 1.00[ASN][1000 genomes] |
| rs11168781 | 1.00[ASN][1000 genomes] |
| rs11534 | 1.00[EUR][1000 genomes] |
| rs11551273 | 1.00[EUR][1000 genomes] |
| rs11830117 | 1.00[EUR][1000 genomes] |
| rs11830164 | 1.00[EUR][1000 genomes] |
| rs11830884 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11831374 | 1.00[EUR][1000 genomes] |
| rs11832160 | 1.00[ASN][1000 genomes] |
| rs11832320 | 1.00[EUR][1000 genomes] |
| rs11833394 | 1.00[EUR][1000 genomes] |
| rs11833669 | 1.00[EUR][1000 genomes] |
| rs11835422 | 1.00[EUR][1000 genomes] |
| rs11837122 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11837277 | 0.83[AFR][1000 genomes] |
| rs11837337 | 1.00[EUR][1000 genomes] |
| rs11837993 | 1.00[EUR][1000 genomes] |
| rs11838009 | 1.00[AFR][1000 genomes] |
| rs11838121 | 1.00[EUR][1000 genomes] |
| rs11838289 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11838360 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12304826 | 1.00[EUR][1000 genomes] |
| rs12305150 | 1.00[EUR][1000 genomes] |
| rs12366919 | 1.00[ASN][1000 genomes] |
| rs17123267 | 1.00[EUR][1000 genomes] |
| rs17123362 | 1.00[ASN][1000 genomes] |
| rs17123398 | 1.00[EUR][1000 genomes] |
| rs17834622 | 1.00[ASN][1000 genomes] |
| rs1895994 | 1.00[ASN][1000 genomes] |
| rs2409084 | 1.00[ASN][1000 genomes] |
| rs2898086 | 0.83[AFR][1000 genomes] |
| rs3013 | 1.00[ASN][1000 genomes] |
| rs36119652 | 1.00[EUR][1000 genomes] |
| rs4132370 | 1.00[ASN][1000 genomes] |
| rs4405363 | 1.00[ASN][1000 genomes] |
| rs55644947 | 1.00[ASN][1000 genomes] |
| rs55956587 | 1.00[EUR][1000 genomes] |
| rs56182935 | 1.00[ASN][1000 genomes] |
| rs57337154 | 0.93[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57454425 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57658152 | 1.00[EUR][1000 genomes] |
| rs59304927 | 1.00[EUR][1000 genomes] |
| rs59636982 | 1.00[AMR][1000 genomes] |
| rs59708884 | 1.00[EUR][1000 genomes] |
| rs60351852 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61663947 | 1.00[AMR][1000 genomes] |
| rs61942009 | 1.00[ASN][1000 genomes] |
| rs61942012 | 1.00[ASN][1000 genomes] |
| rs61942013 | 1.00[ASN][1000 genomes] |
| rs61942018 | 1.00[ASN][1000 genomes] |
| rs61942047 | 1.00[ASN][1000 genomes] |
| rs61942048 | 1.00[ASN][1000 genomes] |
| rs61942049 | 1.00[ASN][1000 genomes] |
| rs61942051 | 1.00[ASN][1000 genomes] |
| rs61942058 | 1.00[ASN][1000 genomes] |
| rs61942059 | 1.00[ASN][1000 genomes] |
| rs61943194 | 1.00[ASN][1000 genomes] |
| rs6580694 | 1.00[ASN][1000 genomes] |
| rs7138342 | 1.00[ASN][1000 genomes] |
| rs7295027 | 1.00[ASN][1000 genomes] |
| rs7295138 | 1.00[ASN][1000 genomes] |
| rs7296987 | 1.00[ASN][1000 genomes] |
| rs7297499 | 0.93[AFR][1000 genomes] |
| rs7303057 | 1.00[EUR][1000 genomes] |
| rs7303113 | 1.00[ASN][1000 genomes] |
| rs73108510 | 1.00[ASN][1000 genomes] |
| rs7312311 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7315319 | 1.00[EUR][1000 genomes] |
| rs74088105 | 0.83[AFR][1000 genomes] |
| rs74088110 | 0.83[AFR][1000 genomes] |
| rs74088131 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74088137 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74088149 | 1.00[AFR][1000 genomes] |
| rs74088167 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74088185 | 1.00[EUR][1000 genomes] |
| rs74088186 | 1.00[EUR][1000 genomes] |
| rs74089357 | 1.00[EUR][1000 genomes] |
| rs74089364 | 1.00[EUR][1000 genomes] |
| rs74089369 | 0.83[AFR][1000 genomes] |
| rs7956989 | 1.00[EUR][1000 genomes] |
| rs7959705 | 1.00[EUR][1000 genomes] |
| rs7961105 | 1.00[AMR][1000 genomes] |
| rs7964801 | 1.00[ASN][1000 genomes] |
| rs7966343 | 1.00[ASN][1000 genomes] |
| rs7966463 | 1.00[ASN][1000 genomes] |
| rs7970421 | 1.00[EUR][1000 genomes] |
| rs7973146 | 1.00[EUR][1000 genomes] |
| rs7973248 | 1.00[EUR][1000 genomes] |
| rs7975102 | 1.00[ASN][1000 genomes] |
| rs7977935 | 1.00[ASN][1000 genomes] |
| rs7979508 | 1.00[ASN][1000 genomes] |
| rs953673 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CCNT1 | Proximal transcriptional regulation |
| KANSL2 | Distal transcriptional regulation |
| CCNT1 | Distal transcriptional regulation |
| PRKAG1 | Distal transcriptional regulation |
| CACNB3 | Distal transcriptional regulation |
| RND1 | Distal transcriptional regulation |
| ADCY6 | Distal transcriptional regulation |
| ENSG00000257660 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014