SNP Report
Basic Infomation
| Name | rs59708884 dbSNP |
|---|---|
| Location | chr:12,49055550 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 51)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875834 | 1.00[EUR][1000 genomes] |
| rs11168583 | 1.00[EUR][1000 genomes] |
| rs11168585 | 1.00[EUR][1000 genomes] |
| rs11534 | 1.00[EUR][1000 genomes] |
| rs11551273 | 1.00[EUR][1000 genomes] |
| rs11830117 | 1.00[EUR][1000 genomes] |
| rs11830164 | 1.00[EUR][1000 genomes] |
| rs11830884 | 1.00[EUR][1000 genomes] |
| rs11831374 | 1.00[EUR][1000 genomes] |
| rs11832320 | 1.00[EUR][1000 genomes] |
| rs11833394 | 1.00[EUR][1000 genomes] |
| rs11833669 | 1.00[EUR][1000 genomes] |
| rs11835040 | 0.93[AFR][1000 genomes] |
| rs11835422 | 1.00[EUR][1000 genomes] |
| rs11837122 | 1.00[EUR][1000 genomes] |
| rs11837277 | 0.93[AFR][1000 genomes] |
| rs11837337 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11837993 | 1.00[EUR][1000 genomes] |
| rs11838121 | 1.00[EUR][1000 genomes] |
| rs11838289 | 1.00[EUR][1000 genomes] |
| rs11838360 | 1.00[EUR][1000 genomes] |
| rs12300165 | 1.00[EUR][1000 genomes] |
| rs12300339 | 1.00[EUR][1000 genomes] |
| rs12304826 | 1.00[EUR][1000 genomes] |
| rs12305150 | 1.00[EUR][1000 genomes] |
| rs17123267 | 1.00[EUR][1000 genomes] |
| rs36119652 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55956587 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56182935 | 0.80[AFR][1000 genomes] |
| rs56934678 | 1.00[AFR][1000 genomes] |
| rs57337154 | 1.00[EUR][1000 genomes] |
| rs57454425 | 1.00[EUR][1000 genomes] |
| rs57658152 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58539734 | 1.00[AFR][1000 genomes] |
| rs59304927 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60351852 | 1.00[EUR][1000 genomes] |
| rs7303057 | 1.00[EUR][1000 genomes] |
| rs7312311 | 1.00[EUR][1000 genomes] |
| rs7315319 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74088131 | 1.00[EUR][1000 genomes] |
| rs74088137 | 1.00[EUR][1000 genomes] |
| rs74088163 | 1.00[EUR][1000 genomes] |
| rs74088167 | 1.00[EUR][1000 genomes] |
| rs74088185 | 1.00[EUR][1000 genomes] |
| rs74088186 | 1.00[EUR][1000 genomes] |
| rs74089357 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74089364 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74089369 | 0.93[AFR][1000 genomes] |
| rs7956989 | 1.00[EUR][1000 genomes] |
| rs7970421 | 1.00[EUR][1000 genomes] |
| rs7973146 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KANSL2 | Proximal transcriptional regulation |
| SNORA2A | Proximal transcriptional regulation |
| SNORA34 | Distal transcriptional regulation |
| KANSL2 | Distal transcriptional regulation |
| SNORA2B | Distal transcriptional regulation |
| SNORA2A | Distal transcriptional regulation |
| KANSL2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014