SNP Report
Basic Infomation
| Name | rs56934678 dbSNP |
|---|---|
| Location | chr:12,49044144 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11835040 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11837277 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11837337 | 0.89[AFR][1000 genomes] |
| rs2898086 | 1.00[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs34046666 | 0.81[EUR][1000 genomes] |
| rs35678179 | 1.00[AMR][1000 genomes] |
| rs36119652 | 0.89[AFR][1000 genomes] |
| rs3902957 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs55956587 | 0.92[AFR][1000 genomes] |
| rs56182935 | 0.80[AFR][1000 genomes];0.82[EUR][1000 genomes] |
| rs57658152 | 0.81[AFR][1000 genomes] |
| rs58539734 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59304927 | 0.89[AFR][1000 genomes] |
| rs59708884 | 1.00[AFR][1000 genomes] |
| rs61496293 | 0.88[EUR][1000 genomes] |
| rs61751603 | 1.00[AMR][1000 genomes] |
| rs61942054 | 1.00[AMR][1000 genomes] |
| rs7299151 | 0.88[EUR][1000 genomes] |
| rs7315319 | 0.81[AFR][1000 genomes] |
| rs74088105 | 1.00[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs74088110 | 1.00[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs74089357 | 1.00[AFR][1000 genomes] |
| rs74089364 | 1.00[AFR][1000 genomes] |
| rs74089369 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SNORA34 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014