SNP Report
Basic Infomation
| Name | rs11838009 dbSNP |
|---|---|
| Location | chr:12,49112874 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11830884 | 0.93[AFR][1000 genomes] |
| rs11837122 | 1.00[AFR][1000 genomes] |
| rs11837277 | 0.83[AFR][1000 genomes] |
| rs11838289 | 0.90[AFR][1000 genomes] |
| rs11838360 | 0.93[AFR][1000 genomes] |
| rs2898086 | 0.83[AFR][1000 genomes] |
| rs35678179 | 0.89[EUR][1000 genomes] |
| rs57337154 | 0.93[AFR][1000 genomes] |
| rs57454425 | 0.93[AFR][1000 genomes] |
| rs60351852 | 0.93[AFR][1000 genomes] |
| rs61751603 | 0.89[EUR][1000 genomes] |
| rs7297499 | 0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7312311 | 0.93[AFR][1000 genomes] |
| rs74088105 | 0.83[AFR][1000 genomes] |
| rs74088110 | 0.83[AFR][1000 genomes] |
| rs74088131 | 0.83[AFR][1000 genomes] |
| rs74088137 | 0.93[AFR][1000 genomes] |
| rs74088149 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs74088163 | 1.00[AFR][1000 genomes] |
| rs74088167 | 1.00[AFR][1000 genomes] |
| rs74089369 | 0.83[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CCNT1 | Proximal transcriptional regulation |
| PRKAG1 | Distal transcriptional regulation |
| ADCY6 | Distal transcriptional regulation |
| ENSG00000257660 | Distal transcriptional regulation |
| CACNB3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014