SNP Report
Name | rs7404095   dbSNP |
---|---|
Location | chr:16,23864590 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10852256 | 1.00[JPT][hapmap] |
rs11074583 | 0.95[JPT][hapmap];0.82[ASN][1000 genomes] |
rs11647116 | 0.99[ASN][1000 genomes] |
rs11860759 | 0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11861775 | 0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12443784 | 0.90[JPT][hapmap] |
rs12598807 | 0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs12922225 | 0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12928465 | 0.81[ASN][1000 genomes] |
rs12935280 | 0.87[EUR][1000 genomes] |
rs2106375 | 0.81[GIH][hapmap];0.90[JPT][hapmap] |
rs2188355 | 0.95[GIH][hapmap];0.95[JPT][hapmap];0.83[MKK][hapmap];0.81[ASN][1000 genomes] |
rs2188358 | 0.84[GIH][hapmap] |
rs3729883 | 0.87[EUR][1000 genomes] |
rs3785403 | 0.93[GIH][hapmap];0.95[JPT][hapmap];0.82[MKK][hapmap];0.81[ASN][1000 genomes] |
rs3826260 | 0.90[JPT][hapmap] |
rs3826262 | 0.88[JPT][hapmap];0.81[ASN][1000 genomes] |
rs3900007 | 0.85[EUR][1000 genomes] |
rs3900008 | 0.85[EUR][1000 genomes] |
rs7193632 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7195232 | 0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7198121 | 0.84[EUR][1000 genomes] |
rs7199385 | 0.87[EUR][1000 genomes] |
rs7200798 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7203341 | 0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7404003 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7404268 | 0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs8056879 | 0.81[GIH][hapmap];0.84[JPT][hapmap] |
rs9806836 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs9923441 | 0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
PRKCB | Distal transcriptional regulation |
PRKCB | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014