SNP Report
Basic Infomation
| Name | rs3900008 dbSNP |
|---|---|
| Location | chr:16,23847013 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11860759 | 0.88[EUR][1000 genomes] |
| rs11861775 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12598807 | 0.88[EUR][1000 genomes] |
| rs12922225 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12924979 | 0.83[AMR][1000 genomes] |
| rs12925342 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs12935280 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3729883 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3900007 | 0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7193632 | 0.83[EUR][1000 genomes] |
| rs7195232 | 0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7198121 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7199385 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7200798 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7203341 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7404003 | 0.85[EUR][1000 genomes] |
| rs7404095 | 0.85[EUR][1000 genomes] |
| rs7404268 | 0.88[EUR][1000 genomes] |
| rs9806836 | 0.85[EUR][1000 genomes] |
| rs9923441 | 0.87[EUR][1000 genomes] |
| rs9939355 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRKCB | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014