SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 21)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11860759	0.90[EUR][1000 genomes]
rs11861775	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12598807	0.90[EUR][1000 genomes]
rs12922225	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12924979	0.88[AMR][1000 genomes]
rs12925342	0.88[AMR][1000 genomes]
rs12935280	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3900007	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3900008	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7193632	0.86[EUR][1000 genomes]
rs7195232	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7198121	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7199385	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7200798	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7203341	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7404003	0.87[EUR][1000 genomes]
rs7404095	0.87[EUR][1000 genomes]
rs7404268	0.90[EUR][1000 genomes]
rs9806836	0.87[EUR][1000 genomes]
rs9923441	0.90[EUR][1000 genomes]
rs9939355	0.86[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
PRKCB	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)