SNP Report
Basic Infomation
| Name | rs11647116 dbSNP |
|---|---|
| Location | chr:16,23865875 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10852256 | 0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11074582 | 0.80[ASN][1000 genomes] |
| rs11074583 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11860759 | 0.97[ASN][1000 genomes] |
| rs11861775 | 0.97[ASN][1000 genomes] |
| rs12598807 | 0.97[ASN][1000 genomes] |
| rs12922225 | 0.96[ASN][1000 genomes] |
| rs12928014 | 0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12928465 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2106375 | 0.80[ASN][1000 genomes] |
| rs2188355 | 0.82[ASN][1000 genomes] |
| rs3785403 | 0.82[ASN][1000 genomes] |
| rs3826262 | 0.82[ASN][1000 genomes] |
| rs7193632 | 0.99[ASN][1000 genomes] |
| rs7195232 | 0.94[ASN][1000 genomes] |
| rs7200798 | 0.94[ASN][1000 genomes] |
| rs7203341 | 0.97[ASN][1000 genomes] |
| rs7404003 | 0.99[ASN][1000 genomes] |
| rs7404095 | 0.99[ASN][1000 genomes] |
| rs7404268 | 0.97[ASN][1000 genomes] |
| rs8056879 | 0.80[ASN][1000 genomes] |
| rs9806836 | 0.97[ASN][1000 genomes] |
| rs9923441 | 0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PRKCB | Distal transcriptional regulation |
| PRKCB | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014