SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 12)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11168326	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12426835	0.83[AMR][1000 genomes]
rs2898045	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4237856	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4307774	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4307775	0.93[AMR][1000 genomes]
rs4344559	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4366552	0.82[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4417373	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4494361	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4547172	0.89[ASN][1000 genomes]
rs57624904	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
VDR	Distal transcriptional regulation
TMEM106C	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)