SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 8)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11574102	1.00[YRI][hapmap]
rs11574132	1.00[YRI][hapmap]
rs2898045	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4237856	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4307774	0.80[ASN][1000 genomes]
rs4366552	0.92[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];0.84[MEX][hapmap];0.93[MKK][hapmap];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4547172	0.83[ASN][1000 genomes]
rs740025	0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
VDR	Distal transcriptional regulation
PFKM	Distal transcriptional regulation
SENP1	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 3)