SNP Report
Basic Infomation
| Name | rs4344559 dbSNP |
|---|---|
| Location | chr:12,48349499 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11168332 | 0.90[ASN][1000 genomes] |
| rs12426835 | 0.81[AMR][1000 genomes] |
| rs2898045 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4237856 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4307775 | 0.84[AMR][1000 genomes] |
| rs4366552 | 1.00[ASW][hapmap];0.89[CEU][hapmap];0.93[MEX][hapmap];0.82[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4417373 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4494361 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4760606 | 0.82[ASN][1000 genomes] |
| rs57624904 | 0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs740025 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VDR | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014