SNP Report
Basic Infomation
| Name | rs73306445 dbSNP |
|---|---|
| Location | chr:20,44420376 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 40)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2144180 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs35492126 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs35928298 | 0.84[AFR][1000 genomes] |
| rs56729606 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57030583 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57894159 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6017651 | 1.00[AMR][1000 genomes] |
| rs6017690 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6017691 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6032450 | 1.00[AMR][1000 genomes] |
| rs6032452 | 1.00[AMR][1000 genomes] |
| rs6032502 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6032519 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6032522 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6032525 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6032580 | 0.84[AFR][1000 genomes] |
| rs60744141 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7272593 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73291467 | 1.00[AMR][1000 genomes] |
| rs73293211 | 0.84[AFR][1000 genomes] |
| rs73293215 | 0.84[AFR][1000 genomes] |
| rs73306272 | 0.84[AFR][1000 genomes] |
| rs73306409 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73306418 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73306424 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73306432 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73306449 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73306452 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73306471 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73306476 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73306480 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73306481 | 0.92[AFR][1000 genomes] |
| rs73306483 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73306486 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73308350 | 0.84[AFR][1000 genomes] |
| rs73308406 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73308414 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8122973 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8123134 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8123196 | 0.84[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DNTTIP1 | Proximal transcriptional regulation |
| WFDC3 | Proximal transcriptional regulation |
| ENSG00000221046 | Distal transcriptional regulation |
| PLTP | Distal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| WFDC3 | Distal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| UBE2C | Distal transcriptional regulation |
| NEURL2 | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014