SNP Report
Basic Infomation
| Name | rs6017691 dbSNP |
|---|---|
| Location | chr:20,44404371 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 34)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2144180 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs35492126 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56729606 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57030583 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57894159 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6017651 | 1.00[AMR][1000 genomes] |
| rs6017690 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6032450 | 1.00[AMR][1000 genomes] |
| rs6032452 | 1.00[AMR][1000 genomes] |
| rs6032502 | 0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6032519 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6032522 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6032525 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60744141 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7272593 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73291467 | 1.00[AMR][1000 genomes] |
| rs73306409 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73306418 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73306424 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73306432 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73306445 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73306449 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73306452 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73306471 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73306476 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73306480 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73306481 | 0.88[AFR][1000 genomes] |
| rs73306483 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73306486 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73308406 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73308414 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8122973 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8123134 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8123196 | 0.91[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000221046 | Proximal transcriptional regulation |
| ENSG00000221046 | Distal transcriptional regulation |
| SDC4 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014