SNP Report
Basic Infomation
| Name | rs6745172 dbSNP |
|---|---|
| Location | chr:2,219229842 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11677067 | 0.81[AMR][1000 genomes] |
| rs11695562 | 0.83[MEX][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12622618 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4674298 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6436053 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6723716 | 0.80[MEX][hapmap] |
| rs7608923 | 0.85[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.85[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C2orf62 | Proximal transcriptional regulation |
| C2orf62 | Distal transcriptional regulation |
| ENSG00000237281 | Distal transcriptional regulation |
| CTDSP1 | Distal transcriptional regulation |
| PNKD | Distal transcriptional regulation |
| ENSG00000225062 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014