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rVarBase
SNP Report
Basic Infomation
Name
rs6723716  
dbSNP
Location
chr:2,219227756
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10172824
0.85[AMR][1000 genomes]
rs1052578
0.81[EUR][1000 genomes]
rs13409846
0.96[CEU][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs4674294
0.82[EUR][1000 genomes]
rs6745172
0.80[MEX][hapmap]
rs9076
0.96[CEU][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
C2orf62
Proximal transcriptional regulation
PNKD
Distal transcriptional regulation
C2orf62
Distal transcriptional regulation
ENSG00000237281
Distal transcriptional regulation
ENSG00000225062
Distal transcriptional regulation
CTDSP1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
eQTL related gene
Source
XRCC5
SCAN
ARPC2
SCAN
PECR
SCAN
ZNF142
SCAN
C2orf24
SCAN
TMEM169
SCAN
PNKD
SCAN