SNP Report
Basic Infomation
| Name | rs9076 dbSNP |
|---|---|
| Location | chr:2,219210781 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10172824 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1052578 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10932775 | 0.82[CHB][hapmap];0.81[JPT][hapmap] |
| rs13409846 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3816562 | 0.93[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4493248 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4674294 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6723716 | 0.96[CEU][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PNKD | Proximal transcriptional regulation |
| ENSG00000225062 | Distal transcriptional regulation |
| PNKD | Distal transcriptional regulation |
| ENSG00000238736 | Distal transcriptional regulation |
| ENSG00000237281 | RNA binding protein mediated regulation |
| PNKD | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 10)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014