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rVarBase
SNP Report
Basic Infomation
Name
rs4674294  
dbSNP
Location
chr:2,219217303
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10172824
0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1052578
1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13409846
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3816562
0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3892153
0.81[ASN][1000 genomes]
rs4493248
0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6723716
0.82[EUR][1000 genomes]
rs9076
1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
C2orf62
Proximal transcriptional regulation
ENSG00000230580
Proximal transcriptional regulation
C2orf62
Distal transcriptional regulation
ENSG00000237281
Distal transcriptional regulation
PNKD
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)